|
|
|
|
Information about assembly B73 RefGen_v2
(also known as AGPv2, B73 RefGen_v2)
|
|
|
Click
here
to learn about maize genome and gene model nomenclature rules.
|
|
|
|
|
|
|
|
|
Stock and Biosample Information |
|
| Stock information |
| |
Stock name |
Coe PI 550473 |
| |
Stock record |
47638 |
| |
Stock details |
Coe PI 550473 |
|
|
| Biosample information |
| |
GenBank BioSample |
SAMN02981394 |
| |
Sample description |
The source for the inbred line B73 used to make the BAC libraries that were sequenced is available from the North Central Regional Plant Introduction Station through the U.S. National Plant Germplasm System under the accession PI 550473. When requesting seed from the North Central Regional Plant Introduction Station, ask for any lot descended from the Coe PI 550473 lines. |
|
|
|
|
|
|
|
|
|
|
|
Sequencing and Assembly Information |
|
| |
Assembly name |
B73 RefGen_v2 |
| |
WGS accession |
|
| |
Sequencing description |
Sequencing technologies: Sanger |
| |
Assembly description |
Assembly methods: phredPhrap v. 2009 and ABySS v. 1.2.7
Construction of pseudomolecules: Map-based order and orientation of a BAC tiling path. |
| |
Browse Genome |
Genome browser at MaizeGDB |
| |
Data download |
ftp://ftp.ensemblgenomes.org/pub/plants/release-7/fasta/zea_mays/dna/
|
| |
Release date |
2010 |
| |
Sequencing method |
Sanger |
| |
Finishing strategy |
Complete genome |
| |
Genome coverage |
n/a (mostly re-ordering/addition of contigs/fosmids) |
|
| Assembly statistics |
|
|
|
|
|
A contig is a contiguous consensus sequence that is
derived from a collection of overlapping reads.
A scaffold is set of a ordered and orientated contigs
that are linked to one another by mate pairs of sequencing reads.
|
|
|
|
|
|
|
|
|
|
|
|
Annotation |
|
| |
Annotation Identifier |
5b |
|
|
|
|
|
|
|
